Package: cystiSim 0.1.2

cystiSim: Agent-Based Model for Taenia_solium Transmission and Control

The cystiSim package provides an agent-based model for Taenia solium transmission and control. cystiSim was developed within the framework of CYSTINET, the European Network on taeniosis/cysticercosis, COST ACTION TD1302.

Authors:Brecht Devleesschauwer [aut, cre], Uffe Christian Braae [aut]

cystiSim_0.1.2.tar.gz
cystiSim_0.1.2.zip(r-4.5)cystiSim_0.1.2.zip(r-4.4)cystiSim_0.1.2.zip(r-4.3)
cystiSim_0.1.2.tgz(r-4.4-any)cystiSim_0.1.2.tgz(r-4.3-any)
cystiSim_0.1.2.tar.gz(r-4.5-noble)cystiSim_0.1.2.tar.gz(r-4.4-noble)
cystiSim_0.1.2.tgz(r-4.4-emscripten)cystiSim_0.1.2.tgz(r-4.3-emscripten)
cystiSim.pdf |cystiSim.html✨
cystiSim/json (API)
NEWS

# Install 'cystiSim' in R:

install.packages('cystiSim', repos = c('https://brechtdv.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/brechtdv/cystisim/issues

Datasets:

man_mbeya - Mbeya human population
man_mbozi - Mbozi human population
pig_mbeya - Mbeya pig population
pig_mbozi - Mbozi pig population

On CRAN:

14 exports 2.06 score 33 dependencies 7 mentions 2 scripts 182 downloads

Last updated 5 years agofrom:27e633dabb. Checks:OK: 3 NOTE: 4. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Sep 07 2024
R-4.5-win	NOTE	Sep 07 2024
R-4.5-linux	NOTE	Sep 07 2024
R-4.4-win	NOTE	Sep 07 2024
R-4.4-mac	NOTE	Sep 07 2024
R-4.3-win	OK	Sep 07 2024
R-4.3-mac	OK	Sep 07 2024

Exports:cystiSim do_man_mda do_pig_mda do_pig_mda_vac do_pig_vac elim fit initiate prevalence random_baseline_man random_baseline_pig report slaughter_binom slaughter_nbinom

Dependencies:cli colorspace evaluate fansi farver ggplot2 glue gtable highr isoband knitr labeling lattice lifecycle magrittr MASS Matrix mgcv munsell nlme pillar pkgconfig R6 RColorBrewer rlang scales tibble utf8 vctrs viridisLite withr xfun yaml

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Agent-based model for _Taenia solium_ transmission and control.	cystiSim-package
Random baseline populations	random_baseline_man random_baseline_pig
'cystiRun' object	cystiRun initiate plot.cystiRun prevalence print.cystiRun update.cystiRun
'cystiSim' object	cystiSim elim elim.cystiSim plot.cystiSim print.cystiSim report report.cystiSim summary.cystiSim
Do human mass drug administration(MDA)	do_man_mda
Do pig mass drug administration (MDA)	do_pig_mda
Do pig mass drug administration (MDA) and vaccination	do_pig_mda_vac
Do pig vaccination	do_pig_vac
Fit cystiSim parameters	fit
Mbeya human population	man_mbeya
Mbozi human population	man_mbozi
Mbeya pig population	pig_mbeya
Mbozi pig population	pig_mbozi
Pig slaughter functions	slaughter_binom slaughter_nbinom