Package: cystiSim 0.2.0

cystiSim: Agent-Based Model for Taenia_solium Transmission and Control

The cystiSim package provides an agent-based model for Taenia solium transmission and control. cystiSim was developed within the framework of CYSTINET, the European Network on taeniosis/cysticercosis, COST ACTION TD1302.

Authors:Brecht Devleesschauwer [aut, cre], Uffe Christian Braae [aut]

cystiSim_0.2.0.tar.gz
cystiSim_0.2.0.zip(r-4.7-any)cystiSim_0.2.0.zip(r-4.6-any)cystiSim_0.2.0.zip(r-4.5-any)
cystiSim_0.2.0.tgz(r-4.6-any)cystiSim_0.2.0.tgz(r-4.5-any)
cystiSim_0.2.0.tar.gz(r-4.7-any)cystiSim_0.2.0.tar.gz(r-4.6-any)
cystiSim_0.2.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
cystiSim/json (API)

# Install 'cystiSim' in R:

install.packages('cystiSim', repos = c('https://brechtdv.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/brechtdv/cystisim/issues

Datasets:

man_mbeya - Mbeya human population
man_mbozi - Mbozi human population
pig_mbeya - Mbeya pig population
pig_mbozi - Mbozi pig population

On CRAN:

3.54 score 2 scripts 468 downloads 7 mentions 14 exports 23 dependencies

Last updated from:7ea07300dd. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel	OK	122
source / vignettes	OK	186
linux-release	OK	106
macos-release	OK	103
macos-oldrel	OK	95
windows-devel	OK	82
windows-release	OK	66
windows-oldrel	OK	80
wasm-release	OK	93

Exports:cystiSim do_man_mda do_pig_mda do_pig_mda_vac do_pig_vac elim fit initiate prevalence random_baseline_man random_baseline_pig report slaughter_binom slaughter_nbinom

Dependencies:cli cpp11 evaluate farver ggplot2 glue gtable highr isoband knitr labeling lifecycle magrittr R6 RColorBrewer rlang S7 scales vctrs viridisLite withr xfun yaml

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Agent-based model for _Taenia solium_ transmission and control.	cystiSim-package
Random baseline populations	random_baseline_man random_baseline_pig
'cystiRun' object	cystiRun initiate plot.cystiRun prevalence print.cystiRun update.cystiRun
'cystiSim' object	cystiSim elim elim.cystiSim plot.cystiSim print.cystiSim report report.cystiSim summary.cystiSim
Do human mass drug administration(MDA)	do_man_mda
Do pig mass drug administration (MDA)	do_pig_mda
Do pig mass drug administration (MDA) and vaccination	do_pig_mda_vac
Do pig vaccination	do_pig_vac
Fit cystiSim parameters	fit
Mbeya human population	man_mbeya
Mbozi human population	man_mbozi
Mbeya pig population	pig_mbeya
Mbozi pig population	pig_mbozi
Pig slaughter functions	slaughter_binom slaughter_nbinom