{ "_id": "6a1d68721d7bb097a0a4e467", "Package": "cystiSim", "Title": "Agent-Based Model for Taenia_solium Transmission and Control", "Version": "0.1.2", "Date": "2020-02-26", "Authors@R": "c(person(\"Brecht\", \"Devleesschauwer\",\nrole = c(\"aut\", \"cre\"),\nemail = \"brechtdv@gmail.com\"),\nperson(\"Uffe Christian\", \"Braae\", role = \"aut\"))", "Author": "Brecht Devleesschauwer [aut, cre], Uffe Christian Braae [aut]", "Maintainer": "Brecht Devleesschauwer ", "Description": "The cystiSim package provides an agent-based model for\nTaenia solium transmission and control. cystiSim was developed\nwithin the framework of CYSTINET, the European Network on\ntaeniosis/cysticercosis, COST ACTION TD1302.", "URL": "https://github.com/brechtdv/cystiSim", "BugReports": "https://github.com/brechtdv/cystiSim/issues", "License": "GPL (>= 2)", "LazyData": "true", "Repository": "https://brechtdv.r-universe.dev", "Date/Publication": "2020-02-26 14:38:11 UTC", "RemoteUrl": "https://github.com/brechtdv/cystisim", "RemoteRef": "HEAD", "RemoteSha": "27e633dabb509c5be1b78dc59d82173a4d70c66d", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-01 10:57:53 UTC", "User": "root" }, "MD5sum": "4a596b5ef3196ebebd099d0f405bc0ec", "_user": "brechtdv", "_type": "src", "_file": "cystiSim_0.1.2.tar.gz", "_fileid": "593c67271cd3a9b39ee3300803ff486a99b33e1aa716e519b902afe713da01d0", "_filesize": 162043, "_sha256": "593c67271cd3a9b39ee3300803ff486a99b33e1aa716e519b902afe713da01d0", "_created": "2026-06-01T10:57:53.000Z", "_published": "2026-06-01T11:09:38.037Z", "_distro": "noble", "_jobs": [ { "job": 78837753967, "time": 121, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7329728840" }, { "job": 78837753935, "time": 117, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7329727787" }, { "job": 78837753958, "time": 92, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7329881968" }, { "job": 78837754005, "time": 104, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7329896656" }, { "job": 78837343197, "time": 154, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7329690424" }, { "job": 78837753962, "time": 101, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7329722991" }, { "job": 78837753948, "time": 90, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7329720033" }, { "job": 78837753946, "time": 85, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7329717934" }, { "job": 78837753963, "time": 112, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7329725882" } ], "_buildurl": "https://github.com/r-universe/brechtdv/actions/runs/26750601301", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/brechtdv/cystisim", "_commit": { "id": "27e633dabb509c5be1b78dc59d82173a4d70c66d", "author": "Brecht ", "committer": "Brecht ", "message": "close progress bar\n", "time": 1582727891 }, "_maintainer": { "name": "Brecht Devleesschauwer", "email": "brechtdv@gmail.com", "login": "brechtdv", "twitter": "@brechtdv", "description": "", "uuid": 3698720 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.6.0", "role": "Depends" }, { "package": "ggplot2", "role": "Depends" }, { "package": "magrittr", "role": "Imports" }, { "package": "knitr", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "utils", "role": "Imports" } ], "_owner": "brechtdv", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "brechtdv", "count": 48, "uuid": 3698720 } ], "_userbio": { "uuid": 3698720, "type": "user", "name": "Brecht" }, "_downloads": { "count": 149, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/cystiSim" }, "_mentions": 7, "_devurl": "https://github.com/brechtdv/cystisim", "_searchresults": 2, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/cystiSim.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/brechtdv/cystisim", "_realowner": "brechtdv", "_cranurl": true, "_releases": [ { "version": "0.1.0", "date": "2016-05-15" } ], "_exports": [ "cystiSim", "do_man_mda", "do_pig_mda", "do_pig_mda_vac", "do_pig_vac", "elim", "fit", "initiate", "prevalence", "random_baseline_man", "random_baseline_pig", "report", "slaughter_binom", "slaughter_nbinom" ], "_datasets": [ { "name": "man_mbeya", "title": "Mbeya human population", "object": "man_mbeya", "class": [ "data.frame" ], "fields": [ "age", "sex", "taenia", "taenia_immature", "time_since_infection", "environment", "time_since_contamination" ], "rows": 6000, "table": true, "tojson": true }, { "name": "man_mbozi", "title": "Mbozi human population", "object": "man_mbozi", "class": [ "data.frame" ], "fields": [ "age", "sex", "taenia", "taenia_immature", "time_since_infection", "environment", "time_since_contamination" ], "rows": 6000, "table": true, "tojson": true }, { "name": "pig_mbeya", "title": "Mbeya pig population", "object": "pig_mbeya", "class": [ "data.frame" ], "fields": [ "age", "cysti", "cysti_immature", "time_since_infection", "intensity", "immunity", "time_since_vaccination", "slaughtered" ], "rows": 498, "table": true, "tojson": true }, { "name": "pig_mbozi", "title": "Mbozi pig population", "object": "pig_mbozi", "class": [ "data.frame" ], "fields": [ "age", "cysti", "cysti_immature", "time_since_infection", "intensity", "immunity", "time_since_vaccination", "slaughtered" ], "rows": 498, "table": true, "tojson": true } ], "_help": [ { "page": "cystiSim-package", "title": "Agent-based model for _Taenia solium_ transmission and control.", "topics": [ "cystiSim-package" ] }, { "page": "baseline", "title": "Random baseline populations", "topics": [ "random_baseline_man", "random_baseline_pig" ] }, { "page": "cystiRun", "title": "'cystiRun' object", "topics": [ "cystiRun", "initiate", "plot.cystiRun", "prevalence", "print.cystiRun", "update.cystiRun" ] }, { "page": "cystiSim", "title": "'cystiSim' object", "topics": [ "cystiSim", "elim", "elim.cystiSim", "plot.cystiSim", "print.cystiSim", "report", "report.cystiSim", "summary.cystiSim" ] }, { "page": "do_man_mda", "title": "Do human mass drug administration(MDA)", "topics": [ "do_man_mda" ] }, { "page": "do_pig_mda", "title": "Do pig mass drug administration (MDA)", "topics": [ "do_pig_mda" ] }, { "page": "do_pig_mda_vac", "title": "Do pig mass drug administration (MDA) and vaccination", "topics": [ "do_pig_mda_vac" ] }, { "page": "do_pig_vac", "title": "Do pig vaccination", "topics": [ "do_pig_vac" ] }, { "page": "fit", "title": "Fit cystiSim parameters", "topics": [ "fit" ] }, { "page": "man_mbeya", "title": "Mbeya human population", "topics": [ "man_mbeya" ] }, { "page": "man_mbozi", "title": "Mbozi human population", "topics": [ "man_mbozi" ] }, { "page": "pig_mbeya", "title": "Mbeya pig population", "topics": [ "pig_mbeya" ] }, { "page": "pig_mbozi", "title": "Mbozi pig population", "topics": [ "pig_mbozi" ] }, { "page": "slaughter", "title": "Pig slaughter functions", "topics": [ "slaughter_binom", "slaughter_nbinom" ] } ], "_readme": "https://github.com/brechtdv/cystisim/raw/HEAD/README.md", "_rundeps": [ "cli", "cpp11", "evaluate", "farver", "ggplot2", "glue", "gtable", "highr", "isoband", "knitr", "labeling", "lifecycle", "magrittr", "R6", "RColorBrewer", "rlang", "S7", "scales", "vctrs", "viridisLite", "withr", "xfun", "yaml" ], "_score": 3.5440680443502757, "_indexed": true, "_nocasepkg": "cystisim", "_universes": [ "brechtdv" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.2", "date": "2026-06-01T10:59:45.000Z", "distro": "noble", "commit": "27e633dabb509c5be1b78dc59d82173a4d70c66d", "fileid": "07452e5d93e3f3006a88d61449e40260b264363046d493c48c6dcd543e90f269", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/brechtdv/actions/runs/26750601301" }, { "r": "4.6.0", "os": "linux", "version": "0.1.2", "date": "2026-06-01T10:59:42.000Z", "distro": "noble", "commit": "27e633dabb509c5be1b78dc59d82173a4d70c66d", "fileid": "65f6ece259840a0ac6ba6d163fa888c5921c8a3d974b23b87fb4df575f34b7f3", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/brechtdv/actions/runs/26750601301" }, { "r": "4.5.3", "os": "mac", "version": "0.1.2", "date": "2026-06-01T11:08:11.000Z", "commit": "27e633dabb509c5be1b78dc59d82173a4d70c66d", "fileid": "4f18e7c3c756e19b2c246624a2e352a05d3d8efee56507b5b88dd8cb40b2c43a", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/brechtdv/actions/runs/26750601301" }, { "r": "4.6.0", "os": "mac", "version": "0.1.2", "date": "2026-06-01T11:09:02.000Z", "commit": "27e633dabb509c5be1b78dc59d82173a4d70c66d", "fileid": "1296593a1b38e616d6193ab32c63436d4e3ab24ea53465dda44ec6a669912fdc", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/brechtdv/actions/runs/26750601301" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.2", "date": "2026-06-01T10:59:51.000Z", "commit": "27e633dabb509c5be1b78dc59d82173a4d70c66d", "fileid": "1247573b46f8de9324d90f24e94f10e07ba5af9d666cc67e52a5ccd8f12b8d0e", "status": "success", "buildurl": "https://github.com/r-universe/brechtdv/actions/runs/26750601301" }, { "r": "4.7.0", "os": "win", "version": "0.1.2", "date": "2026-06-01T10:59:12.000Z", "commit": "27e633dabb509c5be1b78dc59d82173a4d70c66d", "fileid": "d4bd6c2d138ce0a356a5f0de65d71170945ddca13c6a6607897117e78a2ff07d", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/brechtdv/actions/runs/26750601301" }, { "r": "4.5.3", "os": "win", "version": "0.1.2", "date": "2026-06-01T10:59:08.000Z", "commit": "27e633dabb509c5be1b78dc59d82173a4d70c66d", "fileid": "46f220f22c6aa24741706af98440689b6412d9a3f0ad6997fc367cf8502cc6d5", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/brechtdv/actions/runs/26750601301" }, { "r": "4.6.0", "os": "win", "version": "0.1.2", "date": "2026-06-01T10:59:33.000Z", "commit": "27e633dabb509c5be1b78dc59d82173a4d70c66d", "fileid": "556dca3496af756d4b0aa125d30161ccc09dc9abacbb65d0a819840fa5578739", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/brechtdv/actions/runs/26750601301" } ] }